广东省胃肠病学研究所

主要作者论文（#第一作者，*通讯作者）：
(1) Xiaotong Luo^#; Yuantai Huang^#; Huiqin Li; Yihai Luo; Zhixiang Zuo*; Jian Ren*; Yubin Xie* ; SPENCER: a comprehensive database for small peptides encoded by noncoding RNAs in cancer patients, Nucleic Acids Research, 2021, 50(D1): D1373-D1381.
(2) Xiaotong Luo^#; Huiqin Li ^#; Jiaqi Liang; Qi Zhao; Yubin Xie*; Jian Ren*; Zhixiang Zuo* ; RMVar: an updated database of functional variants involved in RNA modifications, Nucleic Acids Research, 2021, 49(D1): D1405-D1412. (ESI HCP)
(3) Yin Zhang^#; Lin Tang^#; Shengyao Zhi^#; Bosu Hu; Zhixiang Zuo; Jian Ren; Yubin Xie*; Xiaotong Luo*(corresponding author), M6Allele: A toolkit for detection of allele-specific RNA N6-methyladenosine modifications (2025). GigaScience. https://doi.org/10.5524/102670.
(4) Yuantai Huang^#, Luowanyue Zhang^#, Weiping Mu^#, Mohan Zheng^#, Xiaoqiong Bao, Huiqin Li, Xiaotong Luo* (co-corresponding author), Jian Ren*, Zhixiang Zuo*, RMVar 2.0: an updated database of functional variants in RNA modifications (2025), Nucleic Acids Research, 53(D1), D275–D283.
(5) Qi Zhao, Xin Zhou, Jingxing Wu, Jieyi Cai , Xiaoqiong Bao, Lin Tang, Chaoye Wang, Chunlei Liu, Yukai Wang, Yuyan Teng, Mohan Zheng, Weiping Mu, Zhixiang Zuo, Yubin Xie, Xiaotong Luo* (co-corresponding author), Jian Ren*. BioTreasury: a community-based repository enabling indexing and rating of bioinformatics tools (2024). Science China Life Sciences, 67(2), 221-229.
(6) Yubin Xie^#; Xiaotong Luo^#; Yupeng Li^#; Li Chen; Wenbin Ma; Junjiu Huang; Jun Cui; Yong Zhao; Yu Xue; Zhixiang Zuo*; Jian Ren*; DeepNitro: Prediction of Protein Nitration and Nitrosylation Sites by Deep Learning, Genomics Proteomics Bioinformatics, 2018, 16(4): 294-306.
(7) Yubin Xie^#; Xiaotong Luo^#; Huiqin Li^#; Qingxian Xu; Zhihao He; Qi Zhao*; Zhixiang Zuo*; Jian Ren*; autoRPA: A web server for constructing cancer staging models by recursive partitioning analy sis, Computational and Structural Biotechnology Journal, 2020, 18: 3361-3367.
(8) Yubin Xie^#, Huiqin Li^#, Xiaotong Luo^#, Hongyu Li, Qiuyuan Gao, Luowanyue Zhang, Yuyan Teng, Qi Zhao, Zhixiang Zuo, Jian Ren*; IBS 2.0: an upgraded illustrator for the visualization of biological sequences, Nucleic Acids Research, 2022, 50(W1): W420–W426.
(9) Mengni Liu^#; Huiqin Li^#; Xiaotong Luo^#; Jieyi Cai; Tianjian Chen; Yubin Xie; Jian Ren*; Zhixiang Zuo*; RPS: a comprehensive database of RNAs involved in liquid–liquid phase separation, Nucleic Acids Research, 2021, 50(D1): D347-D355.
(10) Yubin Xie^#, Xiaotong Luo^#, Zhihao He^#, Yueyuan Zheng, Zhixiang Zuo, Qi Zhao, Yanyan Miao*, Jian Ren*; VirusMap: A visualization database for the influenza A virus, Journal of Genetics and Genomics, 2017, 44(5): 281-284.

主持：
(1) 国家自然科学基金委员会，青年科学基金项目，32200542， ncRNA编码短肽的免疫原性鉴定及其在肿瘤免疫治疗中的应用研究；
(2) 博士后科学基金，第71批面上项目，2022M713633，蛋白质脂质化修饰相关分子变异影响肿瘤免疫治疗的计算研究；
(3) 博士后科学基金，第15批特别资助（站中），2022T150762，Bulk RNA-seq的细胞类型特异表达谱解析算法研究；
(4) 广州市科学技术协会青年人才托举工程类，QT-2023-045，m6A调控的ncRNA 编码短肽的鉴定分析计算研究。

罗晓彤(副研究员，硕士生导师)